polymerist.mdtools.openfftools.solvation.packing ================================================ .. py:module:: polymerist.mdtools.openfftools.solvation.packing .. autoapi-nested-parse:: For packing solvents into Topology boxes using packmol Attributes ---------- .. autoapisummary:: polymerist.mdtools.openfftools.solvation.packing.LOGGER Functions --------- .. autoapisummary:: polymerist.mdtools.openfftools.solvation.packing.pack_topology_with_solvent Module Contents --------------- .. py:data:: LOGGER .. py:function:: pack_topology_with_solvent(offtop: openff.toolkit.Topology, solvent: openff.toolkit.Molecule, box_vecs: Union[polymerist.mdtools.openfftools.boxvectors.VectorQuantity, polymerist.mdtools.openfftools.boxvectors.BoxVectorsQuantity], density: openmm.unit.Quantity, **kwargs) -> openff.toolkit.Topology Pack a Topology with a given solvent molecule to a given box size with desired density The dimensions of the desired box_dimensions