polymerist.genutils.sequences.similarity.distances

Implementations of calculation methods for sequence distance (“inverse similarity”) metrics

Attributes

`T`
`tanimoto_distance`

`hamming_distance`(→ int)	Compute the Hamming distance between a pair of sequences with elements of compatible type (sequences must have the same length)
`jaccard_distance`(→ float)	Compute the Jaccard distance between a pair of sequences with elements of compatible type

polymerist.genutils.sequences.similarity.distances.hamming_distance(seq1: Sequence[T], seq2: Sequence[T]) → int[source]: Compute the Hamming distance between a pair of sequences with elements of compatible type (sequences must have the same length) Denotes the number of elements at the same positions in each sequence which are different

polymerist.genutils.sequences.similarity.distances.jaccard_distance(seq1: Sequence[T], seq2: Sequence[T]) → float[source]: Compute the Jaccard distance between a pair of sequences with elements of compatible type Denotes the complement of the ratio of shared elements (intersection) to total elements (union)